The Finite Element Approximation of the Nonlinear Poisson-Boltzmann Equation

Authors:
Long Chen;Michael J. Holst;Jinchao Xu
Affiliations:
-;-;-
Venue:
SIAM Journal on Numerical Analysis
Year:
2007

Citing 0
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Abstract

A widely used electrostatics model in the biomolecular modeling community, the nonlinear Poisson-Boltzmann equation, along with its finite element approximation, are analyzed in this paper. A regularized Poisson-Boltzmann equation is introduced as an auxiliary problem, making it possible to study the original nonlinear equation with delta distribution sources. A priori error estimates for the finite element approximation are obtained for the regularized Poisson-Boltzmann equation based on certain quasi-uniform grids in two and three dimensions. Adaptive finite element approximation through local refinement driven by an a posteriori error estimate is shown to converge. The Poisson-Boltzmann equation does not appear to have been previously studied in detail theoretically, and it is hoped that this paper will help provide molecular modelers with a better foundation for their analytical and computational work with the Poisson-Boltzmann equation. Note that this article apparently gives the first rigorous convergence result for a numerical discretization technique for the nonlinear Poisson-Boltzmann equation with delta distribution sources, and it also introduces the first provably convergent adaptive method for the equation. This last result is currently one of only a handful of existing convergence results of this type for nonlinear problems.