A districted neural network for start codon prediction

Authors:
Liang Chen;Sharmin Nilufar
Affiliations:
Department of Computer Science, University of Northern British,Columbia, Prince George, BC V2N 4Z9, Canada.;Department of Computer Science, University of Northern British,Columbia, Prince George, BC V2N 4Z9, Canada
Venue:
International Journal of Bioinformatics Research and Applications
Year:
2005

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Abstract

Following the theory on regional and national voting, we constructed a regional voting version NN from Pedersen-Nielsen's NN for start codon prediction in nucleotide sequences. Experiments on the TIS data of vertebrate and Arabidopsis thaliana sequences showed improved performances (Matthews correlation coefficients) of 7% and 14% over the original NN.