Conceptual Spaces: The Geometry of Thought
Conceptual Spaces: The Geometry of Thought
Graph Visualization and Navigation in Information Visualization: A Survey
IEEE Transactions on Visualization and Computer Graphics
DiscoveryLink: a system for integrated access to life sciences data sources
IBM Systems Journal - Deep computing for the life sciences
Early versus late fusion in semantic video analysis
Proceedings of the 13th annual ACM international conference on Multimedia
Evolution of Networks: From Biological Nets to the Internet and WWW (Physics)
Evolution of Networks: From Biological Nets to the Internet and WWW (Physics)
A Nonlinear Mapping for Data Structure Analysis
IEEE Transactions on Computers
DataFoundry: information management for scientific data
IEEE Transactions on Information Technology in Biomedicine
Curvilinear component analysis: a self-organizing neural network for nonlinear mapping of data sets
IEEE Transactions on Neural Networks
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Towards a database for genotype-phenotype association research: mining data from encyclopaedia
International Journal of Data Mining and Bioinformatics
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The emergence of systems biology necessitates development of platforms to organise and interpret plentitude of biological data. We present a system to integrate data across multiple bioinformatics databases and enable mining across various conceptual levels of biological information. The results are represented as complex networks. Context dependent mining of these networks is achieved by use of distances. Our approach is demonstrated with three applications: full metabolic network retrieval with network topology study, exploration of properties and relationships of a set of selected proteins, and combined visualisation and exploration of gene expression data with related pathways and ontologies.