ScBioGrid: a commodity supercomputing environment supporting bioinformatics research

Authors:
B. F. Niu;X. Y. Lang;Z. H. Lu;X. B. Chi
Affiliations:
Supercomputing Centre, Computer Network Information Centre Chinese Academy of Sciences, Beijing, China;Supercomputing Centre, Computer Network Information Centre Chinese Academy of Sciences, Beijing, China;Supercomputing Centre, Computer Network Information Centre Chinese Academy of Sciences, Beijing, China;Supercomputing Centre, Computer Network Information Centre Chinese Academy of Sciences, Beijing, China
Venue:
International Journal of Computer Mathematics - Distributed Algorithms in Science and Engineering
Year:
2007

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Abstract

We have developed a commodity supercomputing environment, ScBioGrid, for supporting bioinformatics research. As an application-specific grid, ScBioGrid is based on ScGrid, which is a scientific computing environment provided by the Supercomputing Centre, Computer Network Information Centre, Chinese Academy of Sciences (SCCAS). The ScBioGrid portal provides a convenient and uniform interface to the bioinformatics resources available on the heterogeneous high-performance computers (HPCs) in SCCAS. In this paper we describe the architecture and services provided by ScBioGrid in detail, and present future work with ScBioGrid.