Guided Forest Edit Distance: Better Structure Comparisons by Using Domain-knowledge

  • Authors:

  • Zeshan Peng;Hing-Fung Ting

  • Affiliations:

  • Department of Computer Science, University of, Hong Kong;Department of Computer Science, University of, Hong Kong

  • Venue:
  • CPM '07 Proceedings of the 18th annual symposium on Combinatorial Pattern Matching
  • Year:
  • 2007

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Abstract

The assignment of orthologous genes between a pair of genomes is a fundamental and challenging problem in comparative genomics. Existing methods that assign orthologs based on the similarity between DNA or protein sequences may make erroneous assignments ...