Neural Network Method for Protein Structure Search Using Cell-Cell Adhesion

Authors:
Cheng-Yuan Liou;Cheng-Jung Ho
Affiliations:
Department of Computer Science and Information Engineering, National Taiwan University, Supported by National Science Council, Republic of China;Department of Computer Science and Information Engineering, National Taiwan University, Supported by National Science Council, Republic of China
Venue:
Neural Information Processing
Year:
2008

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Abstract

We propose a neural network method for three dimensional protein structure search that utilizes the link relationships among features. This method is an offline index-based method which builds indices for protein structures in the database and the search is performed on the indices. We can easily extend this method to incoporate more physical properties of the protein structures since the structural information is preserved in the extracted features.