Sequential Pattern Mining for Protein Function Prediction

Authors:
Miao Wang;Xue-Qun Shang;Zhan-Huai Li
Affiliations:
School of Computer Science and Engineering, Northwestern Polytechnical University, Xi'an, China 710072;School of Computer Science and Engineering, Northwestern Polytechnical University, Xi'an, China 710072;School of Computer Science and Engineering, Northwestern Polytechnical University, Xi'an, China 710072
Venue:
ADMA '08 Proceedings of the 4th international conference on Advanced Data Mining and Applications
Year:
2008

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Abstract

The prediction of protein sequence function is one of the problems arising in the recent progress in bioinformatics. Traditional methods have its limits. We present a novel method of protein sequence function prediction based on sequential pattern mining. First, we use our designed sequential pattern mining algorithms to mine known function sequence dataset. Then, we build a classifier using the patterns generated to predict function of protein sequences. Experiments confirm the effectiveness of our method.