GIMSAN

  • Authors:
  • Patrick Ng;Uri Keich

  • Affiliations:
  • -;-

  • Venue:
  • Bioinformatics
  • Year:
  • 2008

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Abstract

Summary: We present GIMSAN (GIbbsMarkov with Significance ANalysis): a novel tool for de novo motif finding. GIMSAN combines GibbsMarkov, our variant of the Gibbs Sampler, described here for the first time, with our recently introduced significance analysis. Availability: GIMSAN is currently available as a web application and a stand-alone application on Unix and PBS (Portable Batch System) cluster through links from http://www.cs.cornell.edu/~keich. Contact: keich@cs.cornell.edu