Learning cycle-linear hybrid automata for excitable cells
HSCC'07 Proceedings of the 10th international conference on Hybrid systems: computation and control
Automated symbolic reachability analysis: with application to delta-notch signaling automata
HSCC'03 Proceedings of the 6th international conference on Hybrid systems: computation and control
Analyzing pathways using SAT-based approaches
AB'07 Proceedings of the 2nd international conference on Algebraic biology
Computational model of a central pattern generator
CMSB'06 Proceedings of the 2006 international conference on Computational Methods in Systems Biology
Which model to use for cortical spiking neurons?
IEEE Transactions on Neural Networks
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As we obtain better abilities to observe cellular biochemistry at the single cell / molecular levels, such as through fluorescent correlation spectroscopy and single particle tracking, evidences are accumulating that the cells may be taking advantage of intracellular spatial features to realize and optimize their functions. Computer simulation is a useful means to bridge the gap between the microscopic, physico-chemical picture of how macro-molecules diffuse and react, and the scales of time and space where biochemistry and physiology take place.