Mining Intervals of Graphs to Extract Characteristic Reaction Patterns

  • Authors:
  • Frédéric Pennerath;Géraldine Polaillon;Amedeo Napoli

  • Affiliations:
  • Supélec, Metz, France 57070 and Orpailleur team, LORIA, Vandoeuvre-lès-Nancy Cedex, France 54506;Supélec, Gif-sur-Yvette, France 91192;Orpailleur team, LORIA, Vandoeuvre-lès-Nancy Cedex, France 54506

  • Venue:
  • DS '08 Proceedings of the 11th International Conference on Discovery Science
  • Year:
  • 2008

Quantified Score

Hi-index 0.00

Visualization

Abstract

The article introduces an original problem of knowledge discovery from chemical reaction databases that consists in identifying the subset of atoms and bonds that play an effective role in a given chemical reaction. The extraction of the resulting characteristic reaction patternis then reduced to a graph-mining problem: given lower and upper bound graphs gland gu, the search of best patterns in an interval of graphsconsists in finding among connected graphs isomorphic to a subgraph of guand containing a subgraph isomorphic to gl, best patterns that maximize a scoring function and whose score depends on the frequency of the pattern in a set of examples. A method called CrackReacis then proposed to extract best patterns from intervals of graphs. Accuracy and scalability of the method are then evaluated by testing the method on the extraction of characteristic patterns from reaction databases.