New representations in DNA repeats detection

Authors:
Petre G. Pop
Affiliations:
Comm. Dept., Technical University of Cluj-Napoca, Romania
Venue:
ISCGAV'08 Proceedings of the 8th conference on Signal processing, computational geometry and artificial vision
Year:
2008

Citing 4
Cited 0

Spectral Repeat Finder (SRF): identification of repetitive sequences using Fourier transformation

Bioinformatics
Exhaustive whole-genome tandem repeats search

Bioinformatics
Spectrogram analysis of genomes

EURASIP Journal on Applied Signal Processing
Fourier analysis of symbolic data: A brief review

Digital Signal Processing

Quantified Score

Hi-index	0.00

Visualization

Abstract

The presence of repeated sequences is a fundamental feature of biological genomes. The detection of tandem repeats is important in biology and medicine as it can be used for phylogenic studies and disease diagnosis. This paper presents results obtained by combining grey level spectrograms with two novel numerical representations to isolate position and length of DNA repeats.