Investigation of a Biological Repair Scheme

Authors:
Vincent Danos;Jérôme Féret;Walter Fontana;Russell Harmer;Jean Krivine
Affiliations:
University of Edinburgh,;INRIA, CNRS, École Normale Supérieure,;Harvard Medical School,;CNRS, Université Paris-Diderot,;Harvard Medical School,
Venue:
Membrane Computing
Year:
2009

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Abstract

This note details an interaction pattern for the allocation of a scarce biological resource where and when it is needed. It is entirely based on a mass action stochastic dynamics. Domain-domain binding plays a crucial role in the design of the pattern which we therefore present using a rule-based approach where binding is an explicit primitive. We also a use a series of refinements, starting from a very simple interaction set, which we feel gives an interesting and intuitive rationale for the working of the final repair scheme.