An Algorithm for Finding the Largest Approximately Common Substructures of Two Trees
IEEE Transactions on Pattern Analysis and Machine Intelligence
Pattern Discovery in Biomolecular Data: Tools, Techniques, and Applications
Pattern Discovery in Biomolecular Data: Tools, Techniques, and Applications
RADAR: An InteractiveWeb-Based Toolkit for RNA Data Analysis and Research
BIBE '06 Proceedings of the Sixth IEEE Symposium on BionInformatics and BioEngineering
Kernel design for RNA classification using Support Vector Machines
International Journal of Data Mining and Bioinformatics
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In this paper we present the design and implementation of an RNA structural motif database, called RmotifDB. The structural motifs stored in RmotifDB come from three sources: collected manually from the biomedical literature; submitted by scientists around the world; discovered by a wide variety of motif mining methods. We present here a motif mining method in detail. We also describe the interface and search mechanisms provided by RmotifDB and report its current status. The RmotifDB system is fully operational and accessible on the web at http://datalab.njit.edu/bioinfo/.