The entity-relationship model—toward a unified view of data
ACM Transactions on Database Systems (TODS) - Special issue: papers from the international conference on very large data bases: September 22–24, 1975, Framingham, MA
Obol: integrating language and meaning in bio-ontologies: Conference Papers
Comparative and Functional Genomics
A procedure for assessing GO annotation consistency
Bioinformatics
Semiology of graphics
Beyond the data deluge: data integration and bio-ontologies
Journal of Biomedical Informatics - Special issue: Biomedical ontologies
CBMS '06 Proceedings of the 19th IEEE Symposium on Computer-Based Medical Systems
Ontology visualization methods—a survey
ACM Computing Surveys (CSUR)
Special Issue: Biomedical Ontology in Action
Applied Ontology - Biomedical Ontology in Action
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Biomedical ontologies not only capture a wealth of biological knowledge but also provide a representational system to support the integration and retrieval of biological information that shed light on many aspects of disease. Various biomedical ontologies are used by model organism databases to annotate biological entities to the literature and they have become an essential part of high throughput experiments and bioinformatics research. Here we explore the power of ontology visualization to enhance the understanding of annotations by presenting annotations graphically thus showing their context within the broader biological knowledge the ontology provides. Further, by bringing together functional, anatomical and phenotypic annotations for genes implicated in disease, we hope to provide a synthesis that approaches a fuller description and representation of diseases.