Research article: Estimating sufficient statistics in co-evolutionary analysis by mutual information
Computational Biology and Chemistry
A Spectral Approach to Protein Structure Alignment
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Parallel Position Weight Matrices algorithms
Parallel Computing
SMEE: a tool to extract sorting motif data from PubMed Central abstracts and full text documents
Proceedings of the 49th Annual Southeast Regional Conference
Fast protein structure alignment
ISBRA'10 Proceedings of the 6th international conference on Bioinformatics Research and Applications
An open framework for extensible multi-stage bioinformatics software
PRIB'12 Proceedings of the 7th IAPR international conference on Pattern Recognition in Bioinformatics
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Summary: The Biopython project is a mature open source international collaboration of volunteer developers, providing Python libraries for a wide range of bioinformatics problems. Biopython includes modules for reading and writing different sequence file formats and multiple sequence alignments, dealing with 3D macro molecular structures, interacting with common tools such as BLAST, ClustalW and EMBOSS, accessing key online databases, as well as providing numerical methods for statistical learning. Availability: Biopython is freely available, with documentation and source code at www.biopython.org under the Biopython license. Contact: All queries should be directed to the Biopython mailing lists, see www.biopython.org/wiki/_Mailing_listspeter.cock@scri.ac.uk.