A study of smoothing methods for language models applied to Ad Hoc information retrieval
Proceedings of the 24th annual international ACM SIGIR conference on Research and development in information retrieval
TANDEM: matching proteins with tandem mass spectra
Bioinformatics
A Bayesian approach to protein inference problem in shotgun proteomics
RECOMB'08 Proceedings of the 12th annual international conference on Research in computational molecular biology
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We present the first interdisciplinary work on transforming a popular problem in proteomics, i.e. protein identification from tandem mass spectra, to an Information Retrieval (IR) problem. We present an empirical comparison of popular IR approaches, such as those available from Indri and Lemur toolkits on benchmark datasets, to representative popular baselines in the proteomics literature. Our experiments demonstrate statistically significant evidence that popular IR approaches outperform representative baseline approaches in proteomics.