TnT: a statistical part-of-speech tagger
ANLC '00 Proceedings of the sixth conference on Applied natural language processing
A reference ontology for biomedical informatics: the foundational model of anatomy
Journal of Biomedical Informatics - Special issue: Unified medical language system
RelExt: a tool for relation extraction from text in ontology extension
ISWC'05 Proceedings of the 4th international conference on The Semantic Web
KEMM: A Knowledge Engineering Methodology in the Medical Domain
Proceedings of the 2008 conference on Formal Ontology in Information Systems: Proceedings of the Fifth International Conference (FOIS 2008)
Aligning medical domain ontologies for clinical query extraction
EACL '09 Proceedings of the 12th Conference of the European Chapter of the Association for Computational Linguistics: Student Research Workshop
Deriving clinical query patterns from medical corpora using domain ontologies
WBIE '09 Proceedings of the Workshop on Biomedical Information Extraction
Ontology modularization to improve semantic medical image annotation
Journal of Biomedical Informatics
Reasoning-based patient classification for enhanced medical image annotation
ESWC'10 Proceedings of the 7th international conference on The Semantic Web: research and Applications - Volume Part I
Ontologies and terminologies: Continuum or dichotomy?
Applied Ontology - Ontologies and Terminologies: Continuum or Dichotomy?
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Through advanced technologies in clinical care and research, especially the rapid progress in imaging technologies, more and more medical imaging data and patient text data is generated by hospitals, pharmaceutical companies, and medical research. For enabling advanced access to clinical imaging and text data, it is relevant to know what kind of knowledge the clinician wants to know or the queries that clinicians are interested in. Through intensive interviews and discussions with radiologists and clinicians, we have learned that medical imaging data is analyzed - and hence queried -- from three different perspectives, i.e. the anatomic perspective addressing the involved body parts, the radiology-specific spatial perspective describing the relationships of located anatomical regions to other anatomical parts, and the disease perspective distinguishing between normal and abnormal imaging features. Our aim is to establish query patterns reflecting those three perspectives that would typically be used by clinicians and radiologists to find patient-specific sets of relevant images.