Rich parameterization improves RNA structure prediction
RECOMB'11 Proceedings of the 15th Annual international conference on Research in computational molecular biology
Improving the portability and performance of jViz.RNA --- a dynamic RNA visualization software
PRIB'12 Proceedings of the 7th IAPR international conference on Pattern Recognition in Bioinformatics
An Algorithmic Game-Theory Approach for Coarse-Grain Prediction of RNA 3D Structure
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Flexible RNA design under structure and sequence constraints using formal languages
Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics
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Description:VARNA is a tool for the automated drawing, visualization and annotation of the secondary structure of RNA, designed as a companion software for web servers and databases. Features:VARNA implements four drawing algorithms, supports input/output using the classic formats dbn, ct, bpseq and RNAML and exports the drawing as five picture formats, either pixel-based (JPEG, PNG) or vector-based (SVG, EPS and XFIG). It also allows manual modification and structural annotation of the resulting drawing using either an interactive point and click approach, within a web server or through command-line arguments. Availability:VARNA is a free software, released under the terms of the GPLv3.0 license and available at http://varna.lri.fr Contact: ponty@lri.fr Supplementary information:Supplementary data are available at Bioinformatics online.