Automating Three-Dimensional Reconstruction of Icosahedral Virus Structure with Condensed Graphs

  • Authors:
  • Chenqi Wang;Neil Cafferkey;John P. Morrison

  • Affiliations:
  • -;-;-

  • Venue:
  • ISPDC '09 Proceedings of the 2009 Eighth International Symposium on Parallel and Distributed Computing
  • Year:
  • 2009

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Abstract

We present a visual executable workflow for the three-dimensional reconstruction of icosahedral virus structure using the Traditional Model (TM) method. This workflow is implemented using WebCom, a metacomputer platform based on the Condensed Graph (CG) model. The CG model allows the application to be constructed with a structure that closely mirrors an abstract description of the workflow. By utilising WebCom's Integrated Development Environment, we also create a workbench environment that facilitates construction of related workflows through the reuse of components developed for the TM workflow. As an example of this component reuse, we outline the construction of a workflow for the alternative Unbiased Model reconstruction method.