Performance Analysis of Algorithms for Protein Structure Classification

  • Authors:
  • Florin Leon;Bogdan Ioan Aignatoaiei;Mihai Horia Zaharia

  • Affiliations:
  • -;-;-

  • Venue:
  • DEXA '09 Proceedings of the 2009 20th International Workshop on Database and Expert Systems Application
  • Year:
  • 2009

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Abstract

In this paper, we examine the problem of classifying protein fold structure without sequence similarity, by using classification techniques. The representation of the problem in an attribute-based manner allows the application of many well established machine learning algorithms. We study the performance of several algorithms such as decision trees, Naive Bayes, instance-based, and generalized exemplar methods on 27 class problems and on 4 class reduced problems of protein fold classification.