Computing approximate solutions of the protein structure determination problem using global constraints on discrete crystal lattices

Authors:
Alessandro Dal Palu;Agostino Dovier;Enrico Pontelli
Affiliations:
Dipartimento di Matematica, Universita di Parma, Viale G.P. Usberti, 53&#/#/47/A-/43100 Parma, Italy.;Dipartimento di Matematica e Informatica, Universita di Udine, Via delle Scienze, 206-/33100 Udine, Italy.;Department of Computer Science, New Mexico State University, P.O. Box 30001, MSC CS, Las Cruces, NM 88003, USA
Venue:
International Journal of Data Mining and Bioinformatics
Year:
2010

Citing 11
Cited 5

A filtering algorithm for constraints of difference in CSPs

AAAI '94 Proceedings of the twelfth national conference on Artificial intelligence (vol. 1)
A Sufficient Condition for Backtrack-Free Search

Journal of the ACM (JACM)
The Protein Structure Prediction Problem: A Constraint Optimization Approach using a New Lower Bound

Constraints
PSICO: Solving Protein Structures with Constraint Programming and Optimization

Constraints
Applying Constraint Programming to Protein Structure Determination

CP '99 Proceedings of the 5th International Conference on Principles and Practice of Constraint Programming
Sweep as a Generic Pruning Technique Applied to the Non-overlapping Rectangles Constraint

CP '01 Proceedings of the 7th International Conference on Principles and Practice of Constraint Programming
Constraint Processing

Constraint Processing
A Constraint-Based Approach to Fast and Exact Structure Prediction in Three-Dimensional Protein Models

Constraints
A constraint solver for discrete lattices, its parallelization, and application to protein structure prediction

Software—Practice & Experience
The complexity of global constraints

AAAI'04 Proceedings of the 19th national conference on Artifical intelligence
A new constraint solver for 3d lattices and its application to the protein folding problem

LPAR'05 Proceedings of the 12th international conference on Logic for Programming, Artificial Intelligence, and Reasoning

Clp-based protein fragment assembly*

Theory and Practice of Logic Programming
Constraint logic programming

A 25-year perspective on logic programming
Exploring protein fragment assembly using CLP

IJCAI'11 Proceedings of the Twenty-Second international joint conference on Artificial Intelligence - Volume Volume Three
A filtering technique for fragment assembly- based proteins loop modeling with constraints

CP'12 Proceedings of the 18th international conference on Principles and Practice of Constraint Programming
A constraint solver for flexible protein models

Journal of Artificial Intelligence Research

Quantified Score

Hi-index	0.00

Visualization

Abstract

We analyse sequence and structural features of protein-RNA interfaces using RB-147, a non-redundant dataset of protein-RNA complexes extracted from the PDB. We train classifiers using machine learning algorithms to predict protein-RNA ...