Tanimoto Metric in Tree-SOM for Improved Representation of Mass Spectrometry Data with an Underlying Taxonomic Structure

  • Authors:
  • Stephan Simmuteit;Frank-Michael Schleif;Thomas Villmann;Thomas Elssner

  • Affiliations:
  • -;-;-;-

  • Venue:
  • ICMLA '09 Proceedings of the 2009 International Conference on Machine Learning and Applications
  • Year:
  • 2009

Quantified Score

Hi-index 0.00

Visualization

Abstract

In this paper we develop a Tanimoto metric variant of the Evolving Tree for the analysis of mass spectrometric data of animal fur. The Evolving Tree is an extension of Self-Organizing Maps developed to analyze hierarchical clustering problems. Together with the Tanimoto similarity measure, which is intended to work with taxonomic structured data, the Evolving Tree is well suited for the identification of animal hair based on mass spectrometry fingerprints. Results show a suitable hierarchical clustering of the test data and also a good retrieval capability with a logarithmic number of comparisons.