Reducing the number of DNA primers for classifying pejibaye palm races using SVM

Authors:
José Luis Vásquez;Javier Vásquez;Juan Carlos Briceño;Elena Castillo;Carlos M. Travieso
Affiliations:
Sede del Atlántico, Universidad de Costa Rica, Costa Rica;Computer Science Department, University of Costa Rica, Sede "Rodrigo Facio Brenes", San José, Costa Rica;Computer Science Department, University of Costa Rica, Sede "Rodrigo Facio Brenes", San José, Costa Rica;Centro de Investigación en Biología Molecular, Ciudad Universitaria Rodrigo Facio, Universidad de Costa Rica, Costa Rica;Signals and Communications Department, Technological Center in Communication Innovation, University of Las Palmas de Gran Canaria, Edificio de Telecomunicación, Las Palmas de Gran Canaria, Sp ...
Venue:
E-ACTIVITIES'09/ISP'09 Proceedings of the 8th WSEAS International Conference on E-Activities and information security and privacy
Year:
2009

Citing 7
Cited 0

Estimating attributes: analysis and extensions of RELIEF

ECML-94 Proceedings of the European conference on machine learning on Machine Learning
Selection of relevant features and examples in machine learning

Artificial Intelligence - Special issue on relevance
Statistical Pattern Recognition: A Review

IEEE Transactions on Pattern Analysis and Machine Intelligence
Gene Selection for Cancer Classification using Support Vector Machines

Machine Learning
Theoretical and Empirical Analysis of ReliefF and RReliefF

Machine Learning
Benchmarking Attribute Selection Techniques for Discrete Class Data Mining

IEEE Transactions on Knowledge and Data Engineering
Automatic recognition system for pejibaye palm DNA using SVM

ECC'08 Proceedings of the 2nd conference on European computing conference

Quantified Score

Hi-index	0.00

Visualization

Abstract

This paper presents a feature reduction method, applying to Deoxyribonucleic Acid (DNA) primer, obtaining 100% classes identification based on Support Vector Machines (SVM). In particular, the biochemical parameterization has 89 Random Amplified polymorphic DNA (RADP) primers of Pejibaye Palm races, and it has been reduced to 10 RADP primers. The interest of this application is economic and computational, because it is so much cheaper to calculate less primers (only 11.24% from the previous dataset); and therefore, this supervised classification system is faster in order to do a method of origin denomination plant certification.