The halting problem for linear turing assemblers

  • Authors:
  • Robert M. Baer;Jan van Leeuwen

  • Affiliations:
  • Department of Computer Science, University of California, Berkeley, California, USA and Department of Biochemistry and Biophysics, University of California, San Francisco, California, USA;Department of Computer Science, University of California, Berkeley, USA and Department of Mathematics, University of Utrecht, Utrecht, The Netherlands

  • Venue:
  • Journal of Computer and System Sciences
  • Year:
  • 1976

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Abstract

Turing assemblers are Turing machines which operate on n-dimensional tapes under restrictions which characterize a procedure of assembly rather than computation, and which are intended as an abstraction of certain algorithmic processes of molecular biology. It has been previously shown that Turing assemblers with n-dimensional tapes can simulate arbitrary Turing machines for all n1. Here it is shown that for n=1 even nondeterministic Turing assemblers have a sharply restricted computational capability, being able to successfully assemble only regular sets. The halting problem for linear Turing assemblers is therefore algorithmically solvable, and a characterization of the set of achievable final assemblies will be given as a subclass of the context-free languages.