An Algorithm for Finding the Largest Approximately Common Substructures of Two Trees
IEEE Transactions on Pattern Analysis and Machine Intelligence
K2/Kleisli and GUS: experiments in integrated access to genomic data sources
IBM Systems Journal - Deep computing for the life sciences
RADAR: An InteractiveWeb-Based Toolkit for RNA Data Analysis and Research
BIBE '06 Proceedings of the Sixth IEEE Symposium on BionInformatics and BioEngineering
Kernel design for RNA classification using Support Vector Machines
International Journal of Data Mining and Bioinformatics
A user-centric framework for accessing biological sources and tools
DILS'05 Proceedings of the Second international conference on Data Integration in the Life Sciences
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In this paper we present the design and implementation of an RNA structural motif database, called RmotifDB. The structural motifs stored in RmotifDB come from three sources: (1) collected manually from biomedical literature; (2) submitted by scientists around the world; and (3) discovered by a wide variety of motif mining methods. We present here a motif mining method in detail. We also describe the interface and search mechanisms provided by RmotifDB as well as techniques used to integrate RmotifDB with the Gene Ontology. The RmotifDB system is fully operational and accessible on the Internet at http://datalab.njit.edu/bioinfo/