Petri nets: an introduction
Communicating and mobile systems: the &pgr;-calculus
Communicating and mobile systems: the &pgr;-calculus
Journal of Computer and System Sciences
P systems with active membranes: attacking NP-complete problems
Journal of Automata, Languages and Combinatorics
Membrane systems with carriers
Theoretical Computer Science
Membrane Computing: An Introduction
Membrane Computing: An Introduction
The power of communication: P systems with symport/antiport
New Generation Computing
Evolution-Communication P Systems
WMC-CdeA '02 Revised Papers from the International Workshop on Membrane Computing
FoSSaCS '98 Proceedings of the First International Conference on Foundations of Software Science and Computation Structure
Investigating Local Evolutions in Dynamical Probabilistic P Systems
SYNASC '05 Proceedings of the Seventh International Symposium on Symbolic and Numeric Algorithms for Scientific Computing
Discrete solutions to differential equations by metabolic P systems
Theoretical Computer Science
The metabolic algorithm for P systems: Principles and applications
Theoretical Computer Science
Discrete simulations of biochemical dynamics
DNA13'07 Proceedings of the 13th international conference on DNA computing
Reaction-driven membrane systems
ICNC'05 Proceedings of the First international conference on Advances in Natural Computation - Volume Part II
Towards a hybrid metabolic algorithm
WMC'06 Proceedings of the 7th international conference on Membrane Computing
On p systems as a modelling tool for biological systems
WMC'05 Proceedings of the 6th international conference on Membrane Computing
Encoding-Decoding transitional systems for classes of p systems
WMC'05 Proceedings of the 6th international conference on Membrane Computing
P systems and the modeling of biochemical oscillations
WMC'05 Proceedings of the 6th international conference on Membrane Computing
P systems, a new computational modelling tool for systems biology
Transactions on Computational Systems Biology VI
Evolution and oscillation in p systems: applications to biological phenomena
WMC'04 Proceedings of the 5th international conference on Membrane Computing
MetaPlab: A Computational Framework for Metabolic P Systems
Membrane Computing
Hybrid Functional Petri Nets as MP systems
Natural Computing: an international journal
Membrane computing as a modeling framework: cellular systems case studies
SFM'08 Proceedings of the Formal methods for the design of computer, communication, and software systems 8th international conference on Formal methods for computational systems biology
Spatial Calculus of Looping Sequences
Theoretical Computer Science
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Although born as unconventional models of computation, P systems can be conveniently adopted as modeling frameworks for biological systems simulations. This choice brings with it the advantage of producing easier to be devised and understood models than with other formalisms. Nevertheless, the employment of P systems for modeling purposes demands biologically meaningful evolution strategies as well as complete computational tools to run simulations on. In previous papers a strategy of evolution known as the metabolic algorithm has been presented; here a simulation tool called Psim (current version 2.4) is discussed and a case study of its application is also given.