A gentle introduction to stochastic (poly)automata collectives and the (bio)chemical ground form

Authors:
Gianluigi Zavattaro
Affiliations:
Dip. Scienze dell'Informazione, Università di Bologna, Italy
Venue:
SFM'08 Proceedings of the Formal methods for the design of computer, communication, and software systems 8th international conference on Formal methods for computational systems biology
Year:
2008

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Abstract

We present uniformly four related models for the representation of biochemical systems recently proposed in the literature in different publications. Namely, we consider Stochastic Automata Collectives (SAC) [2], Stochastic Polyautomata Collectives (SPC) [2], Chemical Ground Form (CGF) [3], and Biochemical Ground Form (BGF) [4].