On the upper bound of the size of the r-cover-free families
Journal of Combinatorial Theory Series A
Journal of Combinatorial Theory Series A
MFCS '94 Proceedings of the 19th International Symposium on Mathematical Foundations of Computer Science 1994
Group Testing for Image Compression
DCC '00 Proceedings of the Conference on Data Compression
Group Testing With DNA Chips: Generating Designs and Decoding Experiments
CSB '03 Proceedings of the IEEE Computer Society Conference on Bioinformatics
What's hot and what's not: tracking most frequent items dynamically
ACM Transactions on Database Systems (TODS) - Special Issue: SIGMOD/PODS 2003
ESA'07 Proceedings of the 15th annual European conference on Algorithms
IEEE Transactions on Information Theory
IEEE Transactions on Information Theory
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
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Detection of defective members of large populations has been widely studied in the statistics community under the name "group testing", a problem which dates back to World War II when it was suggested for syphilis screening. There, the main interest is to identify a small number of infected people among a large population using collective samples. In viral epidemics, one way to acquire collective samples is by sending agents inside the population. While in classical group testing, it is assumed that the sampling procedure is fully known to the reconstruction algorithm, in this work we assume that the decoder possesses only artial knowledge about the sampling process. This assumption is justified by observing the fact that in a viral sickness, there is a chance that an agent remains healthy despite having contact with an infected person. Therefore, the reconstruction method has to cope with two different types of uncertainty; namely, identification of the infected population and the partially unknown sampling procedure. In this work, by using a natural probabilistic model for "viral infections", we design non-adaptive sampling procedures that allow successful identification of the infected population with overwhelming probability 1 - o(1). We propose both probabilistic and explicit design procedures that require a "small" number of agents to single out the infected individuals. More precisely, for a contamination probability p, the number of agents required by the probabilistic and explicit designs for identification of up to k infected members is bounded by m = O(k2(log n)/p2) and m = O(k2(log2 n)/p2), respectively. In both cases, a simple decoder is able to successfully identify the infected population in time O(mn).