A reference ontology for biomedical informatics: the foundational model of anatomy
Journal of Biomedical Informatics - Special issue: Unified medical language system
Ontology Evolution: Not the Same as Schema Evolution
Knowledge and Information Systems
Integration of biological sources: current systems and challenges ahead
ACM SIGMOD Record
Comparative and Functional Genomics
An ontology for a Robot Scientist
Bioinformatics
Detecting inconsistency in biological molecular databases using ontologies
Data Mining and Knowledge Discovery
Bioinformatics
Investigating ontology development for engineering design support
Advanced Engineering Informatics
Bioinformatics
OBO-Edit—an ontology editor for biologists
Bioinformatics
Bioinformatics
Analyzing the Evolution of Life Science Ontologies and Mappings
DILS '08 Proceedings of the 5th international workshop on Data Integration in the Life Sciences
Journal of Biomedical Informatics
Linking Biological Databases Semantically for Knowledge Discovery
ER '08 Proceedings of the ER 2008 Workshops (CMLSA, ECDM, FP-UML, M2AS, RIGiM, SeCoGIS, WISM) on Advances in Conceptual Modeling: Challenges and Opportunities
Supporting Collaborative Ontology Development in Protégé
ISWC '08 Proceedings of the 7th International Conference on The Semantic Web
Bioinformatics
Modular Ontology Design Using Canonical Building Blocks in the Biochemistry Domain
Proceedings of the 2006 conference on Formal Ontology in Information Systems: Proceedings of the Fourth International Conference (FOIS 2006)
Selecting an ontology for biomedical text mining
BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing
Identifying Gene Ontology Areas for Automated Enrichment
IWANN '09 Proceedings of the 10th International Work-Conference on Artificial Neural Networks: Part II: Distributed Computing, Artificial Intelligence, Bioinformatics, Soft Computing, and Ambient Assisted Living
Survey of modular ontology techniques and their applications in the biomedical domain
Integrated Computer-Aided Engineering - Selected papers from the IEEE Conference on Information Reuse and Integration (IRI), July 13-15, 2008
Automatic Extraction of Ontologies Wrapping Relational Data Sources
DEXA '09 Proceedings of the 20th International Conference on Database and Expert Systems Applications
Guest Editorial: Current issues in biomedical text mining and natural language processing
Journal of Biomedical Informatics
Ontology matching with semantic verification
Web Semantics: Science, Services and Agents on the World Wide Web
Bioportal: a portal for deployment of bioinformatics applications on cluster and grid environments
VECPAR'06 Proceedings of the 7th international conference on High performance computing for computational science
Ontology-based data integration in data logistics workflows
ER'07 Proceedings of the 2007 conference on Advances in conceptual modeling: foundations and applications
Seed-based generation of personalized bio-ontologies for information extraction
ER'07 Proceedings of the 2007 conference on Advances in conceptual modeling: foundations and applications
OBO and OWL: leveraging semantic web technologies for the life sciences
ISWC'07/ASWC'07 Proceedings of the 6th international The semantic web and 2nd Asian conference on Asian semantic web conference
Modelling ontology evaluation and validation
ESWC'06 Proceedings of the 3rd European conference on The Semantic Web: research and applications
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Ontologies enjoy increasing popularity among bioinformatics researchers who seek assistance in coping with the rapid upgrowth of biological data to be handled and related information to be considered. While communities of committed ontology pioneers drive the development and optimisation of ontologies for a wide range of relevant domains, the amble adoption of ontologies in bioinformatics research is still decelerated by technological, managerial and communication barriers. This paper contains a brief review of current trends, challenges and perspectives in ontology research and practice in bioinformatics.