Indexing large metric spaces for similarity search queries
ACM Transactions on Database Systems (TODS)
ACM Computing Surveys (CSUR)
Similarity Search in High Dimensions via Hashing
VLDB '99 Proceedings of the 25th International Conference on Very Large Data Bases
Index-driven similarity search in metric spaces (Survey Article)
ACM Transactions on Database Systems (TODS)
Foundations of Multidimensional and Metric Data Structures (The Morgan Kaufmann Series in Computer Graphics and Geometric Modeling)
MoBIoS: a metric-space DBMS to support biological discovery
SSDBM '03 Proceedings of the 15th International Conference on Scientific and Statistical Database Management
Similarity Search: The Metric Space Approach (Advances in Database Systems)
Similarity Search: The Metric Space Approach (Advances in Database Systems)
Nearest-Neighbor Methods in Learning and Vision: Theory and Practice (Neural Information Processing)
Nearest-Neighbor Methods in Learning and Vision: Theory and Practice (Neural Information Processing)
Element detection relying on information retrieval techniques applied to laser spectroscopy
Proceedings of the Fourth International Conference on SImilarity Search and APplications
On optimizing the non-metric similarity search in tandem mass spectra by clustering
ISBRA'12 Proceedings of the 8th international conference on Bioinformatics Research and Applications
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Query performance is a determining factor in the adoption of an indexing method for similarity query. Metric space indexing methods take great pride in their general applicability. However, it is usually hard for a general method to perform well for every domain. Therefore, it is of interest to investigate the performance of metric-space methods, comparing with domain specific methods, on a particular domain. This paper describes such an investigation for proteomic mass spectra. An inverted index method that exploits the sparsity of mass spectra binary format data and acts as a coarse filter before fine ranking is proposed and empirically compared with an existing metric-space indexing method. Results show that the inverted index method yields greater search efficiency and outperforms the metric-space method in query speed and index size.