Nonoverlapping local alignments (weighted independent sets of axis-parallel rectangles)
Discrete Applied Mathematics - Special volume on computational molecular biology
Determining DNA Sequence Similarity Using Maximum Independent Set Algorithms for Interval Graphs
SWAT '92 Proceedings of the Third Scandinavian Workshop on Algorithm Theory
On the computational complexity of 2-interval pattern matching problems
Theoretical Computer Science
Algorithmic Graph Theory and Perfect Graphs (Annals of Discrete Mathematics, Vol 57)
Algorithmic Graph Theory and Perfect Graphs (Annals of Discrete Mathematics, Vol 57)
SIAM Journal on Computing
Discrete Applied Mathematics
Optimization problems in multiple-interval graphs
SODA '07 Proceedings of the eighteenth annual ACM-SIAM symposium on Discrete algorithms
Removing Noise and Ambiguities from Comparative Maps in Rearrangement Analysis
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Approximating the 2-interval pattern problem
Theoretical Computer Science
The Parameterized Complexity of the Rectangle Stabbing Problem and Its Variants
FAW '08 Proceedings of the 2nd annual international workshop on Frontiers in Algorithmics
On the parameterized complexity of multiple-interval graph problems
Theoretical Computer Science
Parameterized Complexity of Stabbing Rectangles and Squares in the Plane
WALCOM '09 Proceedings of the 3rd International Workshop on Algorithms and Computation
On the Tractability of Maximal Strip Recovery
TAMC '09 Proceedings of the 6th Annual Conference on Theory and Applications of Models of Computation
Constant ratio fixed-parameter approximation of the edge multicut problem
Information Processing Letters
Towards a Dichotomy of Finding Possible Winners in Elections Based on Scoring Rules
MFCS '09 Proceedings of the 34th International Symposium on Mathematical Foundations of Computer Science 2009
Planar Capacitated Dominating Set Is W[1]-Hard
Parameterized and Exact Computation
What Makes Equitable Connected Partition Easy
Parameterized and Exact Computation
Paths of Bounded Length and Their Cuts: Parameterized Complexity and Algorithms
Parameterized and Exact Computation
Inapproximability of Maximal Strip Recovery
ISAAC '09 Proceedings of the 20th International Symposium on Algorithms and Computation
Maximal Strip Recovery Problem with Gaps: Hardness and Approximation Algorithms
ISAAC '09 Proceedings of the 20th International Symposium on Algorithms and Computation
On restrictions of balanced 2-interval graphs
WG'07 Proceedings of the 33rd international conference on Graph-theoretic concepts in computer science
Approximation Algorithms for Predicting RNA Secondary Structures with Arbitrary Pseudoknots
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
On the parameterized complexity of some optimization problems related to multiple-interval graphs
CPM'10 Proceedings of the 21st annual conference on Combinatorial pattern matching
Inapproximability of maximal strip recovery: II
FAW'10 Proceedings of the 4th international conference on Frontiers in algorithmics
Recognizing d-interval graphs and d-track interval graphs
FAW'10 Proceedings of the 4th international conference on Frontiers in algorithmics
Strip graphs: recognition and scheduling
WG'06 Proceedings of the 32nd international conference on Graph-Theoretic Concepts in Computer Science
Algorithms for the extraction of synteny blocks from comparative maps
WABI'07 Proceedings of the 7th international conference on Algorithms in Bioinformatics
Parameterized Complexity
Parameterized Complexity and Approximation Algorithms
The Computer Journal
Inapproximability of maximal strip recovery
Theoretical Computer Science
Parameterized complexity in multiple-interval graphs: partition, separation, irredundancy
COCOON'11 Proceedings of the 17th annual international conference on Computing and combinatorics
Tractability and approximability of maximal strip recovery
Theoretical Computer Science
Parameterized complexity in multiple-interval graphs: domination
IPEC'11 Proceedings of the 6th international conference on Parameterized and Exact Computation
Theoretical Computer Science
Hi-index | 5.23 |
We show that for any constant t=2, k-Independent Set and k-Dominating Set in t-track interval graphs are W[1]-hard. This settles an open question recently raised by Fellows, Hermelin, Rosamond, and Vialette. We also give an FPT algorithm for k-Clique in t-interval graphs, parameterized by both k and t, with running time max{t^O^(^k^),2^O^(^k^l^o^g^k^)}@?poly(n), where n is the number of vertices in the graph. This slightly improves the previous FPT algorithm by Fellows, Hermelin, Rosamond, and Vialette. Finally, we use the W[1]-hardness of k-Independent Set in t-track interval graphs to obtain the first parameterized intractability result for a recent bioinformatics problem called Maximal Strip Recovery (MSR). We show that MSR-d is W[1]-hard for any constant d=4 when the parameter is either the total length of the strips, or the total number of adjacencies in the strips, or the number of strips in the solution.