Near-optimal sublinear time algorithms for Ulam distance

  • Authors:
  • Alexandr Andoni;Huy L. Nguyen

  • Affiliations:
  • Princeton University;Princeton University

  • Venue:
  • SODA '10 Proceedings of the twenty-first annual ACM-SIAM symposium on Discrete Algorithms
  • Year:
  • 2010

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Abstract

We give near-tight bounds for estimating the edit distance between two non-repetitive strings (Ulam distance) with constant approximation, in sub-linear time. For two strings of length d and at edit distance R, our algorithm runs in time Õ(d/R + √d) and outputs a constant approximation to R. We also prove a matching lower bound (up to logarithmic terms). Both upper and lower bounds are improvements over previous results from, respectively, [Andoni-Indyk-Krauthgamer, SODA'09] and [Batu-Ergun-Kilian-Magen-Raskhodnikova-Rubinfeld-Sami, STOC'03].