Scientific workflow management and the Kepler system: Research Articles
Concurrency and Computation: Practice & Experience - Workflow in Grid Systems
Flex-SwA: Flexible Exchange of Binary Data Based on SOAP Messages with Attachments
ICWS '06 Proceedings of the IEEE International Conference on Web Services
Workflows for e-Science: Scientific Workflows for Grids
Workflows for e-Science: Scientific Workflows for Grids
Flexible Scientific Workflow Modeling Using Frames, Templates, and Dynamic Embedding
SSDBM '08 Proceedings of the 20th international conference on Scientific and Statistical Database Management
Bioinformatics
Business Grid: Combining Web Services and the Grid
Transactions on Petri Nets and Other Models of Concurrency II
On-Demand Resource Provisioning for BPEL Workflows Using Amazon's Elastic Compute Cloud
CCGRID '09 Proceedings of the 2009 9th IEEE/ACM International Symposium on Cluster Computing and the Grid
Customizable Visualization of Multi-omics Data in the Context of Biochemical Networks
VIZ '09 Proceedings of the 2009 Second International Conference in Visualisation
Proceedings of the 4th Workshop on Workflows in Support of Large-Scale Science
Fault-Tolerant BPEL Workflow Execution via Cloud-Aware Recovery Policies
SEAA '09 Proceedings of the 2009 35th Euromicro Conference on Software Engineering and Advanced Applications
Scientific Data Management: Challenges, Technology, and Deployment
Scientific Data Management: Challenges, Technology, and Deployment
LCDL: an extensible framework for wrapping legacy code
Proceedings of the 11th International Conference on Information Integration and Web-based Applications & Services
A comparison of using Taverna and BPEL in building scientific workflows: the case of caGrid
Concurrency and Computation: Practice & Experience
CompIMAGE'10 Proceedings of the Second international conference on Computational Modeling of Objects Represented in Images
Cloud MapReduce for Monte Carlo bootstrap applied to Metabolic Flux Analysis
Future Generation Computer Systems
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Software frameworks implementing scientific workflow applications have become ubiquitous in many research fields. The most beneficial advantages of workflow-enabled applications involve automation of routine operations and distributed computing on heterogeneous systems. Particular challenges in scientific applications include grid-scale orchestration of complex tasks with interactive workflows and data management allowing for integration of heterogeneous data sets. We present a workflow for the 13C isotope-based Metabolic Flux Analysis (13C-MFA). The core of any 13C-MFA study is the metabolic network modeling workflow. It consists of sub-tasks involving model set-up and acquisition of measurement data sets within a graphical environment, the evaluation of the model equations and, finally, the visualization of data and simulation results. Human intervention and the integration of various knowledge and data sources is crucial in each step of the modeling workflow. A scientific workflow framework is presented that serves for organization and automation of complex analysis processes involved in 13C-MFA applications. By encapsulating technical details and avoiding recurrent issues, sources for errors are minimized, the evaluation procedure for 13C labeling experiments is accelerated and, moreover, becomes documentable.