Comparison of artificial neural network with logistic regression as classification models for variable selection for prediction of breast cancer patient outcomes

  • Authors:
  • Valérie Bourdès;Stéphane Bonnevay;Paolo Lisboa;Rémy Defrance;David Pérol;Sylvie Chabaud;Thomas Bachelot;Thérèse Gargi;Sylvie Négrier

  • Affiliations:
  • THEMIS, Lyon, France and ICTA-PM, Fontaine les Dijon, France;Laboratoire ERIC, Ecole Polytechnique, Universitaire de Lyon 1, Villeurbanne, France;School of Computing and Mathematical Sciences, Liverpool John Moores University, Liverpool, UK;Oncology Department, Pfizer France, Paris, France;Centre Léon Bérard, Lyon Cedex 08, France;Centre Léon Bérard, Lyon Cedex 08, France;Centre Léon Bérard, Lyon Cedex 08, France;Centre Léon Bérard, Lyon Cedex 08, France;Centre Léon Bérard, Lyon Cedex 08, France

  • Venue:
  • Advances in Artificial Neural Systems
  • Year:
  • 2010

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Abstract

The aim of this study was to compare multilayer perceptron neural networks (NNs) with standard logistic regression (LR) to identify key covariates impacting on mortality from cancer causes, disease-free survival (DFS), and disease recurrence using Area Under Receiver-Operating Characteristics (AUROC) in breast cancer patients. From 1996 to 2004, 2,535 patients diagnosed with primary breast cancer entered into the study at a single French centre, where they received standard treatment. For specific mortality as well as DFS analysis, the ROC curves were greater with the NN models compared to LR model with better sensitivity and specificity. Four predictive factors were retained by both approaches for mortality: clinical size stage, Scarff Bloom Richardson grade, number of invaded nodes, and progesterone receptor. The results enhanced the relevance of the use of NN models in predictive analysis in oncology, which appeared to be more accurate in prediction in this French breast cancer cohort.