Computational Biology and Chemistry
BabelNetXplorer: a platform for multilingual lexical knowledge base access and exploration
Proceedings of the 21st international conference companion on World Wide Web
Pathsift: a library for separating the effects of topology, policy, and protocols on IP routing
Proceedings of the 5th International ICST Conference on Simulation Tools and Techniques
Tutorial on biological networks
Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery
Microarray vs. RNA-Seq: a comparison for active subnetwork discovery
Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine
Shortest paths ranking methodology to identify alterations in PPI networks of complex diseases
Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine
Rule-based whole body modeling for analyzing multi-compound effects
Proceedings of the ACM sixth international workshop on Data and text mining in biomedical informatics
RobExT: a tool to customize microarray data for CellDesigner and Cytoscape
Proceedings of the 5th ACM COMPUTE Conference: Intelligent & scalable system technologies
PRASE: PageRank-based Active Subnetwork Extraction
Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics
Adding the Reliability on Tree Based Topology Construction Algorithms for Wireless Sensor Networks
Wireless Personal Communications: An International Journal
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Summary: Cytoscape is a popular bioinformatics package for biological network visualization and data integration. Version 2.8 introduces two powerful new features—Custom Node Graphics and Attribute Equations—which can be used jointly to greatly enhance Cytoscape's data integration and visualization capabilities. Custom Node Graphics allow an image to be projected onto a node, including images generated dynamically or at remote locations. Attribute Equations provide Cytoscape with spreadsheet-like functionality in which the value of an attribute is computed dynamically as a function of other attributes and network properties. Availability and implementation: Cytoscape is a desktop Java application released under the Library Gnu Public License (LGPL). Binary install bundles and source code for Cytoscape 2.8 are available for download from http://cytoscape.org. Contact: msmoot@ucsd.edu