A New Efficient Data Structure for Storage and Retrieval of Multiple Biosequences
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
KungFQ: A Simple and Powerful Approach to Compress fastq Files
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
High-Throughput Compression of FASTQ Data with SeqDB
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Practical compression for multi-alignment genomic files
ACSC '13 Proceedings of the Thirty-Sixth Australasian Computer Science Conference - Volume 135
| Hi-index | 3.85 |
Motivation: Modern sequencing instruments are able to generate at least hundreds of millions short reads of genomic data. Those huge volumes of data require effective means to store them, provide quick access to any record and enable fast decompression. Results: We present a specialized compression algorithm for genomic data in FASTQ format which dominates its competitor, G-SQZ, as is shown on a number of datasets from the 1000 Genomes Project ( www.1000genomes.org). Availability: DSRC is freely available at http:/sun.aei.polsl.pl/dsrc. Contact: sebastian.deorowicz@polsl.pl Supplementary information:Supplementary data are available at Bioinformatics online.