Parallel genome sequence searching on SupercomputerBlueGene/P

Authors:
Plamenka Borovska;Ognian Nakov;Veska Gancheva;Ivailo Georgiev
Affiliations:
Department of Computer Systems in Technical University of Sofia, Bulgaria;Faculty of Computer Systems and Control in Technical University of Sofia, Bulgaria;Department of Programming and Computer Technologies in Technical University of Sofia, Bulgaria;Department of Computer Systems, Technical University of Sofia, Bulgaria
Venue:
ECS'10/ECCTD'10/ECCOM'10/ECCS'10 Proceedings of the European conference of systems, and European conference of circuits technology and devices, and European conference of communications, and European conference on Computer science
Year:
2010

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Abstract

The aim of this paper is to investigate the efficiency of sequence alignment. The parallel computational model is based on mpiBlast algorithm, data decomposition and manager-worker algorithmic paradigm utilizing massage passing based on MPI and is verified on the basis of flat parallel program implementation on a supercomputer BlueGene/P.