Coding and information theory
Efficient approximation algorithms for the Hamming center problem
Proceedings of the tenth annual ACM-SIAM symposium on Discrete algorithms
On the closest string and substring problems
Journal of the ACM (JACM)
Discrete Mathematical Structures
Discrete Mathematical Structures
Banishing Bias from Consensus Sequences
CPM '97 Proceedings of the 8th Annual Symposium on Combinatorial Pattern Matching
Distinguishing string selection problems
Information and Computation
Optimal Solutions for the Closest-String Problem via Integer Programming
INFORMS Journal on Computing
A parallel multistart algorithm for the closest string problem
Computers and Operations Research
Exact Solutions for Closest String and Related Problems
ISAAC '01 Proceedings of the 12th International Symposium on Algorithms and Computation
Improved LP-based algorithms for the closest string problem
Computers and Operations Research
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The Closest String Problem (CSP) is an NP-hard problem, which arises in computational molecular biology and coding theory. This class of problems is to find a string that minimizes the maximum Hamming distance to a given set of strings. In this paper, we present an exact algorithm called Distance First Algorithm (DFA) for three strings of CSP with alphabet size two. For the general CSP, we design a polynomial heuristic which is a combination of our proposed approximation algorithm LDDA ([10] Liu Xiaolan, Fu Keqiang, Shao Renxiang. Largest distance decreasing algorithm for the Closest String Problem. Journal of Information & Computational Science 2004; 1(2): 287-92) and local search strategies. Numerical results show that the proposed heuristic may obtain a nearly optimal value in a reasonable time for small and large-scale instances of the CSP.