Error-correcting coding theory
Error-correcting coding theory
The Complexity of the Finite Containment Problem for Petri Nets
Journal of the ACM (JACM)
Synthetic Biology: challenges ahead
Bioinformatics
Synthetic biology---putting engineering into biology
Bioinformatics
How might petri nets enhance your systems biology toolkit
PETRI NETS'11 Proceedings of the 32nd international conference on Applications and theory of Petri Nets
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The paper introduces error-correcting Petri nets, an algebraic methodology for designing synthetic biologic systems with monitoring capabilities. Linear error-correcting codes are used to extend the net's structure in a way that allows for the algebraic detection and correction of non-reachable net markings. The presented methodology is based on modulo-p Hamming codes--which are optimal for the modulo-p correction of single errors--but also works with any other linear error-correcting code.