Pilot-MapReduce: an extensible and flexible MapReduce implementation for distributed data
Proceedings of third international workshop on MapReduce and its Applications Date
SNP genotype calling with MapReduce
Proceedings of third international workshop on MapReduce and its Applications Date
Acceleration of the long read mapping on a PC-FPGA architecture (abstract only)
Proceedings of the ACM/SIGDA international symposium on Field programmable gate arrays
Proceedings of the 3rd international workshop on Emerging computational methods for the life sciences
Methodological Review: 'Big data', Hadoop and cloud computing in genomics
Journal of Biomedical Informatics
| Hi-index | 3.84 |
Summary: SEAL is a scalable tool for short read pair mapping and duplicate removal. It computes mappings that are consistent with those produced by BWA and removes duplicates according to the same criteria employed by Picard MarkDuplicates. On a 16-node Hadoop cluster, it is capable of processing about 13 GB per hour in map+rmdup mode, while reaching a throughput of 19 GB per hour in mapping-only mode. Availability: SEAL is available online at http://biodoop-seal.sourceforge.net/. Contact: luca.pireddu@crs4.it