BioSEME: a semantically-integrated content management system for cancer research

  • Authors:

  • Ionut Mihai Stancu

  • Affiliations:

  • Indiana University - School of Informatics, Indianapolis, Indiana

  • Venue:
  • UAHCI'11 Proceedings of the 6th international conference on Universal access in human-computer interaction: applications and services - Volume Part IV
  • Year:
  • 2011

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Abstract

In this project, we propose a paradigm shift from the use of relational databases and traditional web publishing tools to a Semantically-Integrated Research Content Management System augmented with research collaboration functionality for curation of cancer research data. By using a prototype called BioSEME, we will aggregate cancer biomarker-related PubMed literature data using term-specific data feeds. The data will then be annotated by designated users using the standardized taxonomy and vocabulary derived from known ontologies and cancer-related literature, which is subsequently associated and published through the semantically-enhanced user interface. We believe that in the future such online collaborative-research community and semanticallyintegrated virtual scientific knowledge environment will help support the cancer research community.