Boundary Finding with Parametrically Deformable Models
IEEE Transactions on Pattern Analysis and Machine Intelligence
Shape Modeling with Front Propagation: A Level Set Approach
IEEE Transactions on Pattern Analysis and Machine Intelligence
Active shape models—their training and application
Computer Vision and Image Understanding
Region Competition: Unifying Snakes, Region Growing, and Bayes/MDL for Multiband Image Segmentation
IEEE Transactions on Pattern Analysis and Machine Intelligence
An Adaptive-Focus Deformable Model Using Statistical and Geometric Information
IEEE Transactions on Pattern Analysis and Machine Intelligence
Geodesic Active Regions and Level Set Methods for Supervised Texture Segmentation
International Journal of Computer Vision
Metamorphs: Deformable Shape and Appearance Models
IEEE Transactions on Pattern Analysis and Machine Intelligence
Construction of neuroanatomical shape complex atlas from 3D brain MRI
MICCAI'10 Proceedings of the 13th international conference on Medical image computing and computer-assisted intervention: Part III
Temporal Spectral Residual for fast salient motion detection
Neurocomputing
3D anatomical shape atlas construction using mesh quality preserved deformable models
Computer Vision and Image Understanding
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In this paper, we propose a method to segment multiple rodent brain structures simultaneously. This method combines deformable models and hierarchical shape priors within one framework. The deformation module employs both gradient and appearance information to generate image forces to deform the shape. The shape prior module uses Principal Component Analysis to hierarchically model the multiple structures at both global and local levels. At the global level, the statistics of relative positions among different structures are modeled. At the local level, the shape statistics within each structure is learned from training samples. Our segmentation method adaptively employs both priors to constrain the intermediate deformation result. This prior constraint improves the robustness of the model and benefits the segmentation accuracy. Another merit of our prior module is that the size of the training data can be small, because the shape prior module models each structure individually and combines them using global statistics. This scheme can preserve shape details better than directly applying PCA on all structures. We use this method to segment rodent brain structures, such as the cerebellum, the left and right striatum, and the left and right hippocampus. The experiments show that our method works effectively and this hierarchical prior improves the segmentation performance.