Beyond the data deluge: data integration and bio-ontologies
Journal of Biomedical Informatics - Special issue: Biomedical ontologies
An agent- and ontology-based system for integrating public gene, protein, and disease databases
Journal of Biomedical Informatics
Measuring semantic similarity between Gene Ontology terms
Data & Knowledge Engineering
Journal of Biomedical Informatics
A new method to measure the semantic similarity of GO terms
Bioinformatics
Expert Systems with Applications: An International Journal
Toward an ontological database for subcellular neuroanatomy
ER'07 Proceedings of the 2007 conference on Advances in conceptual modeling: foundations and applications
Image-Based Surface Matching Algorithm Oriented to Structural Biology
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Towards an ontology for psychological disorders
International Journal of Metadata, Semantics and Ontologies
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A number of specific web accessible databases are developed in order to shed light into biomolecular data, providing novel perspectives about particular scientific problems or presenting innovative data integration approaches. Ontologies constitute an important enhancement, since they allow a better representation of biological data, by providing a hierarchical structure to organise information, enabling more effective queries, statistical analysis and semantic web searching. Here we present our experience in exploiting ontologies to enrich biomolecular databases in diverse biomolecular contexts. The semantic layer improves data organisation, accessibility and analysis and represents an invaluable support to identify relations among biological components.