Execution of a bioinformatics application in a joint IRISGrid/EGEE testbed

Authors:
José Luis Vázquez-Poletti;E. Huedo;Rubén S. Montero;Ignacio M. Llorente
Affiliations:
Departamento de Arquitectura de Computadores y Automática. Facultad de Informática, Universidad Complutense de Madrid, Madrid, Spain;Laboratorio de Computación Avanzada, Simulación y Aplicaciones Telemáticas, Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Spain;Departamento de Arquitectura de Computadores y Automática. Facultad de Informática, Universidad Complutense de Madrid, Madrid, Spain;Departamento de Arquitectura de Computadores y Automática. Facultad de Informática, Universidad Complutense de Madrid, Madrid, Spain
Venue:
PPAM'05 Proceedings of the 6th international conference on Parallel Processing and Applied Mathematics
Year:
2005

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Abstract

This paper describes the execution of a Bioinformatics application over a highly distributed and heterogeneous testbed. This testbed is composed of resources devoted to EGEE and IRISGrid projects and has been integrated by taking advantage of the modular, decentralized and “end-to-end” architecture of the Grid W ay framework. Results show the feasibility of building loosely-coupled Grid environments based only on Globus services, while obtaining non trivial levels of quality of service. Such approach allows a straightforward resource sharing as the resources are accessed by using de facto standard protocols and interfaces.