A calculus of mobile processes, II
Information and Computation
Communicating and mobile systems: the &pgr;-calculus
Communicating and mobile systems: the &pgr;-calculus
Information Processing Letters
Typing Non-uniform Concurrent Objects
CONCUR '00 Proceedings of the 11th International Conference on Concurrency Theory
A Typing System for a Calculus of Objects
Proceedings of the First JSSST International Symposium on Object Technologies for Advanced Software
Modeling and querying biomolecular interaction networks
Theoretical Computer Science - Special issue: Computational systems biology
Theoretical Computer Science - Special issue: Computational systems biology
Biomolecular Agents as Multi-behavioural Concurrent Objects
Electronic Notes in Theoretical Computer Science (ENTCS)
Abstract machines of systems biology
Transactions on Computational Systems Biology III
Beta binders for biological interactions
CMSB'04 Proceedings of the 20 international conference on Computational Methods in Systems Biology
The biochemical abstract machine BIOCHAM
CMSB'04 Proceedings of the 20 international conference on Computational Methods in Systems Biology
CMSB'04 Proceedings of the 20 international conference on Computational Methods in Systems Biology
A compositional approach to the stochastic dynamics of gene networks
Transactions on Computational Systems Biology IV
Transactions on Computational Systems Biology X
A stochastic pi calculus for concurrent objects
AB'07 Proceedings of the 2nd international conference on Algebraic biology
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Stochastic simulation of genetic networks based on models in the stochastic π-calculus is a promising recent approach. This paper contributes an extensible model of the central mechanisms of gene expression i.e. transcription and translation, at the prototypical instance of bacteria. We reach extensibility through object-oriented abstractions, that are expressible in a stochastic π-calculus with pattern guarded inputs. We illustrate our generic model by simulating the effect of translational bursting in bacterial gene expression.