An implementation for mapping SBML to BioSPI

Authors:
Zhupeng Dong;Xiaoju Dong;Xian Xu;Yuxi Fu;Zhizhou Zhang;Lin He
Affiliations:
BASICS, Department of Computer Science and Engineering, Shanghai Jiao Tong University, Shanghai, China;BASICS, Department of Computer Science and Engineering, Shanghai Jiao Tong University, Shanghai, China;BASICS, Department of Computer Science and Engineering, Shanghai Jiao Tong University, Shanghai, China;BASICS, Department of Computer Science and Engineering, Shanghai Jiao Tong University, Shanghai, China;BDCC, College of Life Science and Biotechnology, Shanghai Jiao Tong University, Shanghai, China;BDCC, College of Life Science and Biotechnology, Shanghai Jiao Tong University, Shanghai, China
Venue:
FSKD'05 Proceedings of the Second international conference on Fuzzy Systems and Knowledge Discovery - Volume Part II
Year:
2005

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Abstract

The Systems Biology Markup Language(SBML) is an XML-based format for representing models of Systems Biology. BioSPI is a formal model to simulate biological systems, which is evolved from process calculi. Based on the previous research on modeling Systems Biology using process algebra, we propose a method to map SBML to BioSPI. The motivation of the work is to make full use of BioSPI to analyze biological systems described by SBML. In this paper, the mapping rules are presented and an example is given to show the simulation results.