Finding similar regions in many strings
STOC '99 Proceedings of the thirty-first annual ACM symposium on Theory of computing
Distinguishing string selection problems
Information and Computation
A data-based coding of candidate strings in the closest string problem
Proceedings of the 11th Annual Conference Companion on Genetic and Evolutionary Computation Conference: Late Breaking Papers
Ant-CSP: An Ant Colony Optimization Algorithm for the Closest String Problem
SOFSEM '10 Proceedings of the 36th Conference on Current Trends in Theory and Practice of Computer Science
More efficient algorithms for closest string and substring problems
RECOMB'08 Proceedings of the 12th annual international conference on Research in computational molecular biology
Swiftly computing center strings
WABI'10 Proceedings of the 10th international conference on Algorithms in bioinformatics
More Efficient Algorithms for Closest String and Substring Problems
SIAM Journal on Computing
A heuristic algorithm based on Lagrangian relaxation for the closest string problem
Computers and Operations Research
On the closest string via rank distance
CPM'12 Proceedings of the 23rd Annual conference on Combinatorial Pattern Matching
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In this paper, we design genetic algorithm and simulated annealing algorithm and their parallel versions to solve the Closest String Problem. Our implementation and experiments show usefulness of the parallel GA and SA algorithms.