Inspecting regularities and irregularities in SNOMED-CT

  • Authors:
  • Eleni Mikroyannid;Luigi Iannone;Robert Stevens;Alan Rector

  • Affiliations:
  • The University of Manchester, Manchester;The University of Manchester, Manchester;The University of Manchester, Manchester;The University of Manchester, Manchester

  • Venue:
  • Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences
  • Year:
  • 2011

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Abstract

Detecting planned and unplanned deviations from guidelines that give rise to patterns in ontologies can be difficult, even simply in terms of detecting regularities in a complex artefact. In this paper we demonstrate the usage of RIO; a framework for detecting such syntactic regularities using cluster analysis of the entities in ontologies. We demonstrate its usage with SNOMED-CT, a large medical terminology. We focus on the inspection of three modules from SNOMED-CT and we analyse them in terms of their types and number of regularities and irregularities. The results show that modules of the ontology that did not follow a general pattern contained defects such as missing existential restrictions. In the worst case, the expected patterns described in the technical guide of the ontology were followed by 10% of the corresponding entities in the module. We argue that RIO can provide a means by which the possible deviations of design styles can be found and reported to the domain experts.