Model checking and abstraction
ACM Transactions on Programming Languages and Systems (TOPLAS)
Abstract interpretation of reactive systems
ACM Transactions on Programming Languages and Systems (TOPLAS)
Shape analysis for mobile ambients
Proceedings of the 27th ACM SIGPLAN-SIGACT symposium on Principles of programming languages
Theoretical Computer Science
POPL '77 Proceedings of the 4th ACM SIGACT-SIGPLAN symposium on Principles of programming languages
Information Processing Letters
Systematic design of program analysis frameworks
POPL '79 Proceedings of the 6th ACM SIGACT-SIGPLAN symposium on Principles of programming languages
Validating firewalls using flow logics
Theoretical Computer Science
ACM Transactions on Programming Languages and Systems (TOPLAS)
Safe Ambients: Control Flow Analysis and Security
ASIAN '00 Proceedings of the 6th Asian Computing Science Conference on Advances in Computing Science
Comparing the Galois Connection and Widening/Narrowing Approaches to Abstract Interpretation
PLILP '92 Proceedings of the 4th International Symposium on Programming Language Implementation and Logic Programming
Abstract Interpretation of Mobile Ambients
SAS '99 Proceedings of the 6th International Symposium on Static Analysis
Abstract Interpretation-Based Static Analysis of Mobile Ambients
SAS '01 Proceedings of the 8th International Symposium on Static Analysis
Formal Modeling of C. elegans Development: A Scenario-Based Approach
CMSB '03 Proceedings of the First International Workshop on Computational Methods in Systems Biology
A spatial logic for concurrency (part I)
Information and Computation - TACS 2001
On abstract interpretation of mobile ambients
Information and Computation
Static analysis for systems biology
WISICT '04 Proceedings of the winter international synposium on Information and communication technologies
Modeling and querying biomolecular interaction networks
Theoretical Computer Science - Special issue: Computational systems biology
BioAmbients: an abstraction for biological compartments
Theoretical Computer Science - Special issue: Computational systems biology
Logical Analysis of Biological Systems
Fundamenta Informaticae - Contagious Creativity - In Honor of the 80th Birthday of Professor Solomon Marcus
A new occurrence counting analysis for bioambients
APLAS'05 Proceedings of the Third Asian conference on Programming Languages and Systems
A parametric model for the analysis of mobile ambients
APLAS'05 Proceedings of the Third Asian conference on Programming Languages and Systems
Beta binders for biological interactions
CMSB'04 Proceedings of the 20 international conference on Computational Methods in Systems Biology
Model checking biological systems described using ambient calculus
CMSB'04 Proceedings of the 20 international conference on Computational Methods in Systems Biology
Control Flow Analysis for Brane Calculi
Electronic Notes in Theoretical Computer Science (ENTCS)
Approximating Probabilistic Behaviors of Biological Systems Using Abstract Interpretation
Electronic Notes in Theoretical Computer Science (ENTCS)
Abstract interpretation based verification of temporal properties for BioAmbients
Information and Computation
An Analysis for Causal Properties of Membrane Interactions
Electronic Notes in Theoretical Computer Science (ENTCS)
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This paper concerns the application of formal methods to biological systems, modeled specifically in BioAmbients [34], a variant of the Mobile Ambients [4] calculus. Following the semantic-based approach of abstract interpretation, we define a new static analysis that computes an abstract transition system. Our analysis has two main advantages with respect to the analyses appearing in literature: (i) it is able to address temporal properties which are more general than invariant properties; (ii) it supports, by means of a particular labeling discipline, the validation of systems where several copies of an ambient may appear.