Triangulating the surface of a molecule
Discrete Applied Mathematics - Special volume on computational molecular biology
NURBS based B-rep models for macromolecules and their properties
SMA '97 Proceedings of the fourth ACM symposium on Solid modeling and applications
A Generalization of Algebraic Surface Drawing
ACM Transactions on Graphics (TOG)
SODA '01 Proceedings of the twelfth annual ACM-SIAM symposium on Discrete algorithms
Dynamic maintenance and visualization of molecular surfaces
Discrete Applied Mathematics - Special issue: Computational molecular biology series issue IV
Fast analytical computation of Richards's smooth molecular surface
VIS '93 Proceedings of the 4th conference on Visualization '93
Dynamic maintenance of molecular surfaces under conformational changes
SCG '05 Proceedings of the twenty-first annual symposium on Computational geometry
An algebraic spline model of molecular surfaces
Proceedings of the 2007 ACM symposium on Solid and physical modeling
Molecular surfaces on proteins via beta shapes
Computer-Aided Design
Visual Exploration of Genomic Data
PKDD 2007 Proceedings of the 11th European conference on Principles and Practice of Knowledge Discovery in Databases
Triangulation of molecular surfaces
Computer-Aided Design
Implicit Curves and Surfaces: Mathematics, Data Structures and Algorithms
Implicit Curves and Surfaces: Mathematics, Data Structures and Algorithms
Triangulation of Molecular Surfaces Using an Isosurface Continuation Algorithm
ICCSA '09 Proceedings of the 2009 International Conference on Computational Science and Its Applications
Interactive Visualization of Molecular Surface Dynamics
IEEE Transactions on Visualization and Computer Graphics
Quality meshing of implicit solvation models of biomolecular structures
Computer Aided Geometric Design - Special issue: Applications of geometric modeling in the life sciences
IEEE Transactions on Visualization and Computer Graphics
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Unlike the current atomistic DNA models, this paper proposes a new 3D space-filling model for sequences of DNA base pairs using nucleotides, instead of atoms, as building blocks of DNA molecules. This nucleotide-based model is more scalable than the traditional atomistic model, and has the advantage that easily adapts to any topological conformation of DNA. Interestingly, this model also allows the building of the molecular surface of the DNA, either partly or entirely, as needed for energy computations in molecular applications. Moreover, it allows us to grasp the DNA shape at different levels of shape composition: atom, nucleotide, and DNA macromolecule as a whole.